PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G280100.1
Common NameB456_004G280100, LOC105792891
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 328aa    MW: 36577.6 Da    PI: 6.5333
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G280100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.4e-35131042102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k+y++++d+++++li+w +++nsf+v+d+ +f++k+Lp yFkhsnf+SF+RQLn+YgF+kv++++         weF++++F +g+k+
  Gorai.004G280100.1  13 FVAKTYQMVNDPATDDLITWGKTNNSFIVIDPLDFSHKILPFYFKHSNFTSFIRQLNTYGFRKVDSDK---------WEFANEWFLRGQKH 94 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll+++ r+k+
  Gorai.004G280100.1  95 LLKNVVRRKT 104
                         ******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-37797IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.6E-539102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.67E-3310102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-2913102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-181336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-185163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEAANCNDVV PPFVAKTYQM VNDPATDDLI TWGKTNNSFI VIDPLDFSHK ILPFYFKHSN  60
FTSFIRQLNT YGFRKVDSDK WEFANEWFLR GQKHLLKNVV RRKTGGNRCV RLKKGEVLDG  120
GSDGDGYDDG EIVMEIARMK EEQKWLEEEL KGMNERLETT ERRPKQMVAF LRQVVEDPGF  180
VLCLVLEKQR SRRIMLEKRR LKVVPPLAVS NNSVKYEGEG WHAELTSSSS SPSPSPEDSM  240
VVLERRDIVG QVMNNGCGTI TSQSPVVVPP VNGNSTAVFS SGMSSLVGYG DGNGQLRYLG  300
DMAEVAGGTM EARVSLPYPF SLFGGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-251010426131Heat shock factor protein 1
5d5v_B3e-251010426131Heat shock factor protein 1
5d5v_D3e-251010426131Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486140.0KJ748614.1 Gossypium hirsutum HSF11 (HSF11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477186.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV521e-75HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0D2N4Q30.0A0A0D2N4Q3_G
STRINGPOPTR_0018s05770.13e-91(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2456634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-67heat shock transcription factor C1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]